Index

B

br (challenges.challenge.Challenge attribute) build() (challenges.challenge.Challenge method) (HelloFasta.challenge.HelloFastaChallenge method) (HelloGraph.challenge.HelloGraphChallenge method) (HelloWorld.challenge.HelloWorldChallenge method)

C

calc() (challenges.challenge.Challenge method) (HelloFasta.challenge.HelloFastaChallenge method) (HelloGraph.challenge.HelloGraphChallenge method) (HelloWorld.challenge.HelloWorldChallenge method) Challenge (class in challenges.challenge) challenges (module)

challenges.challenge (module) challenges.conf (module) challenges.main (module) challenges.runner (module) challenges.scaffold (module) ChallengeTestCase (class in tests.test_challenge) Conf (class in challenges.conf)

E

edge_pattern (challenges.challenge.Challenge attribute) edges() (challenges.challenge.Challenge method) example() (challenges.challenge.Challenge method) expect (challenges.challenge.Challenge attribute) (HelloFasta.challenge.HelloFastaChallenge attribute) (HelloGraph.challenge.HelloGraphChallenge attribute) (HelloWorld.challenge.HelloWorldChallenge attribute)

expectation() (challenges.challenge.Challenge method)

F

fasta() (challenges.challenge.Challenge method) fasta_pattern (challenges.challenge.Challenge attribute) fasta_strands() (challenges.challenge.Challenge method) format() (challenges.challenge.Challenge method) (HelloGraph.challenge.HelloGraphChallenge method) (HelloWorld.challenge.HelloWorldChallenge method)

format_list_of_integers() (challenges.challenge.Challenge method) format_path() (challenges.challenge.Challenge method) format_permutations() (challenges.challenge.Challenge method)

G

get_challenge() (challenges.conf.Conf method) get_challenge_dir() (challenges.conf.Conf method) get_challenge_file() (challenges.conf.Conf method) get_challenge_init_file() (challenges.conf.Conf method) get_challenge_name() (challenges.conf.Conf method) get_challenges() (challenges.conf.Conf method) get_class() (challenges.conf.Conf static method) get_class_content() (challenges.scaffold.Scaffold method) get_full_qualified_challenge_name() (challenges.conf.Conf method)

get_full_qualified_unittest_name() (challenges.conf.Conf method) get_input_file() (challenges.conf.Conf method) get_latest_at_root() (challenges.conf.Conf method) get_latest_file() (challenges.conf.Conf method) get_result_file() (challenges.conf.Conf method) get_sample_file() (challenges.conf.Conf method) get_unittest() (challenges.conf.Conf method) get_unittest_content() (challenges.scaffold.Scaffold method) get_unittest_file() (challenges.conf.Conf method)

H

HelloFasta (module) HelloFasta.challenge (module) HelloFasta.test (module) HelloFastaChallenge (class in HelloFasta.challenge) HelloFastaTest (class in HelloFasta.test) HelloGraph (module) HelloGraph.challenge (module)

HelloGraph.test (module) HelloGraphChallenge (class in HelloGraph.challenge) HelloGraphTest (class in HelloGraph.test) HelloWorld (module) HelloWorld.challenge (module) HelloWorld.test (module) HelloWorldChallenge (class in HelloWorld.challenge) HelloWorldTest (class in HelloWorld.test)

L

line() (challenges.challenge.Challenge method) line_to_edge() (challenges.challenge.Challenge method) line_to_edges() (challenges.challenge.Challenge method) line_to_float() (challenges.challenge.Challenge method) line_to_floats() (challenges.challenge.Challenge method) line_to_integer() (challenges.challenge.Challenge method) line_to_integers() (challenges.challenge.Challenge method) line_to_permutation() (challenges.challenge.Challenge method) line_to_permutations() (challenges.challenge.Challenge method)

line_to_words() (challenges.challenge.Challenge method) lines (challenges.challenge.Challenge attribute) lines_to_edges() (challenges.challenge.Challenge method) lines_to_floats() (challenges.challenge.Challenge method) lines_to_graph() (challenges.challenge.Challenge method) lines_to_integers() (challenges.challenge.Challenge method) lines_to_list() (challenges.challenge.Challenge method) lines_to_words() (challenges.challenge.Challenge method) list_challenges() (challenges.runner.Runner method)

M

main() (challenges.challenge.Challenge method) (challenges.runner.Runner method) (in module challenges.main)

model (challenges.challenge.Challenge attribute) multi_edge_pattern (challenges.challenge.Challenge attribute)

O

output (challenges.challenge.Challenge attribute)

P

parse_arguments() (challenges.conf.Conf method)

print_help() (challenges.conf.Conf method)

R

read() (challenges.challenge.Challenge method) read_file() (challenges.runner.Runner method) result (challenges.challenge.Challenge attribute)

run_challenge() (challenges.runner.Runner method) run_unittest() (challenges.runner.Runner method) Runner (class in challenges.runner)

S

sample (challenges.challenge.Challenge attribute) (HelloFasta.challenge.HelloFastaChallenge attribute) (HelloGraph.challenge.HelloGraphChallenge attribute) (HelloWorld.challenge.HelloWorldChallenge attribute) Scaffold (class in challenges.scaffold) scaffold() (challenges.scaffold.Scaffold method)

set_sample() (challenges.runner.Runner method) setUp() (HelloFasta.test.HelloFastaTest method) (HelloGraph.test.HelloGraphTest method) (HelloWorld.test.HelloWorldTest method) (tests.test_challenge.ChallengeTestCase method) split_pattern (challenges.challenge.Challenge attribute)

T

test__init__() (HelloFasta.test.HelloFastaTest method) (HelloGraph.test.HelloGraphTest method) (HelloWorld.test.HelloWorldTest method) test_build() (HelloFasta.test.HelloFastaTest method) (HelloGraph.test.HelloGraphTest method) (HelloWorld.test.HelloWorldTest method) (tests.test_challenge.ChallengeTestCase method) test_calc() (HelloWorld.test.HelloWorldTest method) (tests.test_challenge.ChallengeTestCase method) test_class_attributes() (tests.test_challenge.ChallengeTestCase method) test_fasta_strands() (tests.test_challenge.ChallengeTestCase method) test_format() (HelloGraph.test.HelloGraphTest method) (HelloWorld.test.HelloWorldTest method) (tests.test_challenge.ChallengeTestCase method) test_format_list_of_integers() (tests.test_challenge.ChallengeTestCase method) test_format_path() (tests.test_challenge.ChallengeTestCase method) test_format_permuations() (tests.test_challenge.ChallengeTestCase method) test_format_permuations_with_user_defined_separator() (tests.test_challenge.ChallengeTestCase method) test_format_permuations_with_user_defined_separator_of_length_zero() (tests.test_challenge.ChallengeTestCase method) test_full_integration() (HelloFasta.test.HelloFastaTest method) (HelloGraph.test.HelloGraphTest method) (HelloWorld.test.HelloWorldTest method) test_instance_attributes() (tests.test_challenge.ChallengeTestCase method) test_instance_shadows_class_attribute_of_expect() (tests.test_challenge.ChallengeTestCase method) test_instance_shadows_class_attribute_of_sample() (tests.test_challenge.ChallengeTestCase method) test_line() (tests.test_challenge.ChallengeTestCase method)

test_line_to_edge() (tests.test_challenge.ChallengeTestCase method) test_line_to_edges() (tests.test_challenge.ChallengeTestCase method) test_line_to_float() (tests.test_challenge.ChallengeTestCase method) test_line_to_floats() (tests.test_challenge.ChallengeTestCase method) test_line_to_integer() (tests.test_challenge.ChallengeTestCase method) test_line_to_integers() (tests.test_challenge.ChallengeTestCase method) test_line_to_permuation() (tests.test_challenge.ChallengeTestCase method) test_line_to_permuation_surrounded_with_terminals() (tests.test_challenge.ChallengeTestCase method) test_line_to_permuation_with_parenthesis() (tests.test_challenge.ChallengeTestCase method) test_line_to_permutations() (tests.test_challenge.ChallengeTestCase method) test_line_to_words() (tests.test_challenge.ChallengeTestCase method) test_lines_to_edges() (tests.test_challenge.ChallengeTestCase method) test_lines_to_floats() (tests.test_challenge.ChallengeTestCase method) test_lines_to_graph() (tests.test_challenge.ChallengeTestCase method) test_lines_to_integers() (tests.test_challenge.ChallengeTestCase method) test_lines_to_list() (tests.test_challenge.ChallengeTestCase method) test_lines_to_words() (tests.test_challenge.ChallengeTestCase method) test_read() (tests.test_challenge.ChallengeTestCase method) test_read_edges_from() (tests.test_challenge.ChallengeTestCase method) test_read_edges_from_to() (tests.test_challenge.ChallengeTestCase method) test_read_edges_without_given_range() (tests.test_challenge.ChallengeTestCase method) test_read_fasta_format() (tests.test_challenge.ChallengeTestCase method) test_read_fasta_from() (tests.test_challenge.ChallengeTestCase method) test_read_fasta_from_to() (tests.test_challenge.ChallengeTestCase method) test_read_fasta_without_given_range() (tests.test_challenge.ChallengeTestCase method) tests (module) tests.test_challenge (module)

W

write() (challenges.runner.Runner method)